- Spring 2014 - Physics 580
2:30 - 3:45am T, Th, 214 Hammond
Elements of Network Science and its Applications
More information and lecture notes
Our research is driven by an ongoing dialog between experimental measurements and
theoretical modeling. We build our models on the most salient features of a system,
and use our results as predictions and guidance for future experiments. Our diverse,
interdisciplinary projects are characterized by the common goal of identifying
organizing principles of complex systems.
More information on research topics
Recent Selected Works
Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint Sonic hedgehog and Wnt pathway activation,
Cancer Research 74, 5 963 (2014).
- A. M. Jones, Y. Xuan, M. Xu, R. S. Wang, C. H. Ho, S. Lalonde, C. H. You, M. I. Sardi, S. A. Parsa, E. Smith-Valle, T. Su, K. A. Frazer, G. Pilot, R. Pratelli, G. Grossmann, B. R. Acharya, H.-C. Hu, C. Engineer, F. Villiers, C. Ju, K. Takeda, Z. Su, Q. Dong, S. M. Assmann, J. Chen, J. M. Kwak, J. I. Schroeder, R. Albert, S. Y. Rhee, and W. B. Frommer,
Border Control—A Membrane-Linked Interactome of Arabidopsis,
Science 344, 711-716 (2014).
Multi-level modeling of light-induced stomatal opening offers new insight into its regulation by drought,
PLOS Computational Biology 10, e1003930 (2014).
- C. Campbell, R. Albert,
Stabilization of perturbed Boolean network attractors through compensatory interactions,
BMC Systems Biology 8:53 (2014).
Restoration of plant-pollinator interaction networks via species translocation,
Theoretical Ecology 7, 209-220 (2014)
- R. Albert, B. DasGupta, N. Mobasheri
Topological implications of negative curvature for biological and social networks,
Phys. Rev. E 89, 032811 (2014)
- R. Albert, J. Thakar,
Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions,
WIREs Systems Biology and Medicine 6, 353-369 (2014)
Plant-pollinator community network response to species invasion depends on both invader and community characteristics,
Oikos (accepted, 2014).
Boolean modeling of biological regulatory networks: A methodology tutorial,
Methods 62, 3-12 (2013).
Highlighted in Physics Focus http://physics.aps.org/articles/v5/98